BLAST Search

Program Database

Enter sequence below in FASTA format
>Sample A AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATT AAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGT AGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAA TATAGGCATAGCGCACAGACAGATAAAAATTACAGAGTACACAACAT CCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTAC CACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAG CCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAG GTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAA ATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCC AGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCAC CAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGAT GCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTT GACGGGACTCGCCGCCGCCCAGCCGGGGTTCCCGCTGGCGCAATTGA AAACTTTCGTCGATCAGGAATTTGCCCAAATAAAACATGTCCTGCAT GGCATTAGTTTGTTGGGGCAGTGCCCGGATAGCATCAACGCTGCGC TGATTTGCCGTGGCGAGAAAATGTCGATCGCCATTATGGCCGGCGTATTAGAA
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Set subsequence: From To

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only Expect
Matrix Perform ungapped alignment
Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)
Frame shift penalty for blastx
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Graphical Overview Alignment view
Descriptions Alignments Color schema